Publications

(2024). Global genomic surveillance of monkeypox virus.. Nature medicine.

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(2024). Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus below the Subgroup Level. Emerging infectious diseases.

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(2024). Phylogeography and reassortment patterns of human influenza A viruses in sub-Saharan Africa. medRxiv.

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(2024). An updated framework for SARS-CoV-2 variants reflects the unpredictability of viral evolution.. Nature medicine.

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(2024). Informing the pandemic response: the role of the WHO's COVID-19 Weekly Epidemiological Update. BMJ Global Health.

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(2024). The unified proposal for classification of human respiratory syncytial virus below the subgroup level. medRxiv.

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(2024). Phylogeography and reassortment patterns of human influenza A viruses in sub-Saharan Africa. medRxiv.

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(2024). Molecular epidemiology of recurrent zoonotic transmission of mpox virus in West Africa. medRxiv.

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(2024). Global genomic surveillance of monkeypox virus. medRxiv.

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(2024). Genomic epidemiology uncovers the timing and origin of the emergence of mpox in humans. medRxiv.

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(2023). Rhinovirus dynamics across different social structures. npj Viruses.

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(2023). Description of the first global outbreak of mpox: an analysis of global surveillance data.. The Lancet. Global health.

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(2023). Accelerating bioinformatics implementation in public health. Microbial Genomics.

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(2023). New nomenclature for mpox (monkeypox) and monkeypox virus clades. The Lancet Infectious Diseases.

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(2023). When to update COVID-19 vaccine composition. Nature Medicine.

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(2023). TheiaEuk: A Species-Agnostic Bioinformatics Workflow for Fungal Genomic Characterization. Frontiers in Public Health.

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(2023). SARS-CoV-2 variant risk evaluation, 30 August 2022. World Health Organization.

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(2022). Spatial-temporal distribution and sequence diversity of group a human respiratory syncytial viruses in Kenya preceding the emergence of ON1 genotype. Influenza and other Respiratory Viruses.

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(2022). Origins and Evolution of Seasonal Human Coronaviruses. Viruses.

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(2022). Origins and Evolution of Seasonal Human Coronaviruses. bioRxiv.

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(2021). Comparative analysis of spatial-temporal patterns of human metapneumovirus and respiratory syncytial virus in Africa using genetic data, 2011–2014. Virology Journal.

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(2021). Endemic chikungunya fever in Kenyan children: a prospective cohort study. BMC Infectious Diseases.

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(2020). Evolution of respiratory syncytial virus genotype BA in Kilifi, Kenya, 15 years on. Scientific Reports.

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(2020). Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015–17. Virus Evolution.

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(2020). Epidemiological and evolutionary dynamics of influenza B virus in coastal Kenya as revealed by genomic analysis of strains sampled over a single season. Virus Evolution.

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(2020). Genetic characterization of influenza A(H3N2) viruses circulating in coastal Kenya, 2009-2017. Influenza and other Respiratory Viruses.

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(2019). Peripheral blood mononuclear cell transcriptomes reveal an over-representation of down-regulated genes associated with immunity in HIV-exposed uninfected infants. Scientific Reports.

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(2019). Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007-2016. BMC Infectious Diseases.

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(2018). Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains. Virus Evolution.

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(2018). Human coronavirus NL63 molecular epidemiology and evolutionary patterns in rural coastal Kenya. Journal of Infectious Diseases.

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(2017). Spread and evolution of respiratory syncytial virus a genotype ON1, coastal Kenya, 2010-2015. Emerging Infectious Diseases.

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(2017). Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis. Virus Evolution.

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(2016). Molecular Evolutionary Dynamics of Respiratory Syncytial Virus Group A in Recurrent Epidemics in Coastal Kenya. Journal of Virology.

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(2015). As Clear as Mud? Determining the Diversity and Prevalence of Prophages in the Draft Genomes of Estuarine Isolates of Clostridium difficile. Genome Biology and Evolution.

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(2015). Local Evolutionary Patterns of Human Respiratory Syncytial Virus Derived from Whole-Genome Sequencing. Journal of Virology.

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(2015). Successive Respiratory Syncytial Virus Epidemics in Local Populations Arise from Multiple Variant Introductions, Providing Insights into Virus Persistence. Journal of Virology.

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(2014). Examining strain diversity and phylogeography in relation to an unusual epidemic pattern of respiratory syncytial virus (RSV) in a long-term refugee camp in Kenya. BMC Infectious Diseases.

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(2014). Rapid spread and diversification of respiratory syncytial virus genotype ON1, Kenya. Emerging Infectious Diseases.

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