Publications

Frank J. Ambrosio, Michelle R. Scribner, Sage M. Wright, James R. Otieno, Emma L. Doughty, Andrew Gorzalski, Danielle Denise Siao, Steve Killian, Chi Hua, Emily Schneider, Michael Tran, Vici Varghese, Kevin G. Libuit, Mark Pandori, Joel R. Sevinsky, David Hess (2023). TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization. Frontiers in Public Health.
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Henry Laurenson-Schafer, Nikola Sklenovská, Ana Hoxha, Steven M. Kerr, Patricia Ndumbi, Julia Fitzner, Maria Almiron, Luis Alves de Sousa, Sylvie Briand, Orlando Cenciarelli, Soledad Colombe, Meg Doherty, Ibrahima Soce Fall, Christian García-Calavaro, Joana M. Haussig, Masaya Kato, Abdi Rahman Mahamud, Oliver W. Morgan, Pierre Nabeth, Jeremias Domingos Naiene, Wildo Araujo Navegantes, Opeayo Ogundiran, Charles Okot, Richard Pebody, Tamano Matsui, Hugo López-Gatell Ramírez, Catherine Smallwood, Raúl Francisco Pérez Tasigchana, Aisling M. Vaughan, George Sie Williams, Peter Omondi Mala, Rosamund F. Lewis, Boris I. Pavlin, Olivier le Polain de Waroux, Basma Abdelgawad, Amarnath Babu, Evans Buliva, Finlay Campbell, Daniel Cardoso Portela Câmara, Zainab Eleiba, Blanche Johanna Greene-Cramer, Esther Hamblion, Mahmoud Hassan, Kaja Kaasik-Aaslav, Basant Mohamed, Victoria Ndarukwa, James Richard Otieno, Jeffrey Pires, Jukka Pukkila, Felix Sanni, Craig Schultz, Tika Sedai, Laila Skrowny, Manilay Phengxay, Ariuntuya Ochirpurev, Jozica Skufca, Laura Goddard, Viema Biaukula (2023). Description of the first global outbreak of mpox: an analysis of global surveillance data. The Lancet Global Health.
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Kevin G. Libuit, Emma L. Doughty, James R. Otieno, Frank Ambrosio, Curtis J. Kapsak, Emily A. Smith, Sage M. Wright, Michelle R. Scribner, Robert A. Petit III, Catarina Inês Mendes, Marcela Huergo, Gregory Legacki, Christine Loreth, Daniel J. Park, Joel R. Sevinsky (2023). Accelerating bioinformatics implementation in public health. Microbial Genomics.
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Rebecca Grant, Jilian A. Sacks, Priya Abraham, Supamit Chunsuttiwat, Cheryl Cohen, J. Peter Figueroa, Thomas Fleming, Paul Fine, David Goldblatt, Hideki Hasegawa, C. Raina MacIntrye, Ziad A. Memish, Elizabeth Miller, Sergio Nishioka, Amadou A. Sall, Samba Sow, Oyewale Tomori, Youchun Wang, Maria D. Van Kerkhove, Marie-Ange Wambo, Homa Attar Cohen, Samuel Mesfin, James R. Otieno, Lorenzo Subissi, Sylvie Briand, David E. Wentworth, Kanta Subbarao (2023). When to update COVID-19 vaccine composition. Nature Medicine.
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David Ulaeto, Alexander Agafonov, Jennifer Burchfield, Lisa Carter, Christian Happi, Robert Jakob, Eva Krpelanova, Krutika Kuppalli, Elliot J. Lefkowitz, Matthew R. Mauldin, Tulio de Oliveira, Bernard Onoja, James Otieno, Andrew Rambaut, Lorenzo Subissi, Adesola Yinka-Ogunleye, Rosamund F. Lewis (2023). New nomenclature for mpox (monkeypox) and monkeypox virus clades. The Lancet Infectious Diseases.
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World Health Organization (2023). SARS-CoV-2 variant risk evaluation, 30 August 2023. World Health Organization.
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James R. Otieno, Joshua L. Cherry, David J. Spiro, Martha I. Nelson, Nídia S. Trovão (2022). Origins and Evolution of Seasonal Human Coronaviruses. Viruses.
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Julia Wangui, D. James Nokes, Victor A. Mobegi, James R. Otieno, Charles N. Agoti, Joseph J. N. Ngeranwa, Wallace D. Bulimo (2022). Spatial‐temporal distribution and sequence diversity of group a human respiratory syncytial viruses in Kenya preceding the emergence of ON1 genotype. Influenza and Other Respiratory Viruses.
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Doris K. Nyamwaya, Mark Otiende, Donwilliams O. Omuoyo, George Githinji, Henry K. Karanja, John N. Gitonga, Zaydah R. de Laurent, James R. Otieno, Rosemary Sang, Everlyn Kamau, Stanley Cheruiyot, Edward Otieno, Charles N. Agoti, Philip Bejon, Samuel M. Thumbi, George M. Warimwe (2021). Endemic chikungunya fever in Kenyan children: a prospective cohort study. BMC Infectious Diseases.
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John W. Oketch, Everlyn Kamau, James R. Otieno, Anthony Mwema, Clement Lewa, Everlyne Isoe, D. James Nokes, Charles N. Agoti (2021). Comparative analysis of spatial-temporal patterns of human metapneumovirus and respiratory syncytial virus in Africa using genetic data, 2011–2014. Virology Journal.
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