Publications

Katherine R. Hargreaves, James R. Otieno, Anisha Thanki, Matthew J. Blades, Andrew D. Millard, Hilary P. Browne, Trevor D. Lawley, Martha R. J. Clokie (2015). As Clear as Mud? Determining the Diversity and Prevalence of Prophages in the Draft Genomes of Estuarine Isolates of Clostridium difficile. Genome Biology and Evolution.
URL DOI
Charles N. Agoti, James R. Otieno, Patrick K. Munywoki, Alexander G. Mwihuri, Patricia A. Cane, D. James Nokes, Paul Kellam, Matthew Cotten (2015). Local Evolutionary Patterns of Human Respiratory Syncytial Virus Derived from Whole-Genome Sequencing. Journal of Virology.
URL DOI
Charles N. Agoti, Lillian M. Mayieka, James R. Otieno, Jamal A. Ahmed, Barry S. Fields, Lilian W. Waiboci, Raymond Nyoka, Rachel B. Eidex, Nina Marano, Wagacha Burton, Joel M. Montgomery, Robert F. Breiman, D. James Nokes (2014). Examining strain diversity and phylogeography in relation to an unusual epidemic pattern of respiratory syncytial virus (RSV) in a long-term refugee camp in Kenya. BMC Infectious Diseases.
URL DOI
Charles N. Agoti, James R. Otieno, Caroline W. Gitahi, Patricia A. Cane, D. James Nokes (2014). Rapid Spread and Diversification of Respiratory Syncytial Virus Genotype ON1, Kenya. Emerging Infectious Diseases.
URL DOI