Otieno JR
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  • Publications
    • Human MERS-CoV cases are falling but pose an ongoing pandemic threat
    • Mapping the Landscape of Pathogen Genomics Training: A Structured Analysis of Training Provision within a Global Consortium Network
    • Middle East respiratory syndrome: global summary and assessment of risk
    • Analytical considerations for genomic surveillance of mpox virus
    • Strategic plan for coronavirus disease threat management: advancing integration, sustainability, and equity, 2025–2030
    • Genomics reveals zoonotic and sustained human Mpox spread in West Africa.
    • A systematic nomenclature for mpox viruses causing outbreaks with sustained human-to-human transmission
    • Attributes and Principles of Genomic Data-Sharing Platforms Supporting Surveillance of Pathogens with Epidemic and Pandemic Potential
    • Molecular Analysis of Human Respiratory Syncytial Virus Group B Strains Isolated in Kenya Before and During the Emergence of Pandemic Influenza A/H1N1
    • Global genomic surveillance of monkeypox virus.
    • Phylogeography and reassortment patterns of human influenza A viruses in sub-Saharan Africa
    • Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus below the Subgroup Level
    • An updated framework for SARS-CoV-2 variants reflects the unpredictability of viral evolution
    • Informing the pandemic response: the role of the WHO’s COVID-19 Weekly Epidemiological Update
    • Genomic epidemiology uncovers the timing and origin of the emergence of mpox in humans
    • Global genomic surveillance of monkeypox virus
    • Molecular epidemiology of recurrent zoonotic transmission of mpox virus in West Africa
    • Phylogeography and reassortment patterns of human influenza A viruses in sub-Saharan Africa
    • The unified proposal for classification of human respiratory syncytial virus below the subgroup level
    • Rhinovirus dynamics across different social structures
    • TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization
    • Accelerating bioinformatics implementation in public health
    • Description of the first global outbreak of mpox: an analysis of global surveillance data
    • When to update COVID-19 vaccine composition
    • New nomenclature for mpox (monkeypox) and monkeypox virus clades
    • SARS-CoV-2 variant risk evaluation, 30 August 2023
    • Origins and Evolution of Seasonal Human Coronaviruses
    • Spatial‐temporal distribution and sequence diversity of group a human respiratory syncytial viruses in Kenya preceding the emergence of ON1 genotype
    • Endemic chikungunya fever in Kenyan children: a prospective cohort study
    • Comparative analysis of spatial-temporal patterns of human metapneumovirus and respiratory syncytial virus in Africa using genetic data, 2011–2014
    • Evolution of respiratory syncytial virus genotype BA in Kilifi, Kenya, 15 years on
    • Epidemiological and evolutionary dynamics of influenza B virus in coastal Kenya as revealed by genomic analysis of strains sampled over a single season
    • Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015–17
    • Genetic characterization of influenza A(H3N2) viruses circulating in coastal Kenya, 2009‐2017
    • Peripheral blood mononuclear cell transcriptomes reveal an over-representation of down-regulated genes associated with immunity in HIV-exposed uninfected infants
    • Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains
    • Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya
    • Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis
    • Molecular Evolutionary Dynamics of Respiratory Syncytial Virus Group A in Recurrent Epidemics in Coastal Kenya
    • Successive Respiratory Syncytial Virus Epidemics in Local Populations Arise from Multiple Variant Introductions, Providing Insights into Virus Persistence
    • As Clear as Mud? Determining the Diversity and Prevalence of Prophages in the Draft Genomes of Estuarine Isolates of Clostridium difficile
    • Local Evolutionary Patterns of Human Respiratory Syncytial Virus Derived from Whole-Genome Sequencing
    • Examining strain diversity and phylogeography in relation to an unusual epidemic pattern of respiratory syncytial virus (RSV) in a long-term refugee camp in Kenya
    • Rapid Spread and Diversification of Respiratory Syncytial Virus Genotype ON1, Kenya
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Strategic plan for coronavirus disease threat management: advancing integration, sustainability, and equity, 2025–2030

Dec 1, 2025·
World Health Organization
· 0 min read
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Last updated on Dec 1, 2025
← Analytical considerations for genomic surveillance of mpox virus Dec 1, 2025
Genomics reveals zoonotic and sustained human Mpox spread in West Africa. May 1, 2025 →

© 2026 James Richard Otieno. This work is licensed under CC BY NC ND 4.0

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